PacBio Systems Archives - Page 228 of 232

July 7, 2019 |

Reevaluation of the complete genome sequence of Magnetospirillum gryphiswaldense MSR-1 with Single-Molecule Real-Time Sequencing data.

Magnetospirillum gryphiswaldense is a key organism for understanding magnetosome formation and magnetotaxis. As earlier studies suggested a high genomic plasticity, we (re)sequenced the type strain MSR-1 and the laboratory strain R3/S1. Both sequences differ by only 11 point mutations, but organization of the magnetosome island deviates from that of previous genome sequences. Copyright © 2018 Uebe et al.

July 7, 2019 |

Draft genome sequence of a Shewanella halifaxensis strain isolated from the intestine of marine red seabream (Pagrus major), which includes an integrative conjugative element with macrolide resistance genes.

Shewanella halifaxensis strain 6JANF4-E-4 was isolated from the intestine of a red seabream (Pagrus major). Here, we report the draft genome sequence of this bacterium, which includes an integrative conjugative element of the SXT/R391 family, where the macrolide resistance determinants mef(C) and mph(G) exist. Copyright © 2018 Sugimoto et al.

July 7, 2019 |

Complete genome sequence of the heavy-Metal-tolerant endophytic type strain of Salinicola tamaricis.

The first complete genome sequence of a recently described Salinicola tamaricis species was determined for the strain F01T (=CCTCC AB 2015304T =KCTC 42855T). The strain was isolated from the leaves of wetland plant Tamarix chinensis Lour and shows a high tolerance to heavy metals, such as manganese, nickel, lead, and copper ions. Copyright © 2018 Shang et al.

July 7, 2019 |

Complete genome sequence of Methylomonas denitrificans strain FJG1, an obligate aerobic methanotroph that can couple methane oxidation with denitrification.

Methylomonas denitrificans strain FJG1 is a member of the gammaproteobacterial methanotrophs. The sequenced genome of FJG1 reveals the presence of genes that encode methane, methanol, formaldehyde, and formate oxidation. It also contains genes that encode enzymes for nitrate reduction to nitrous oxide, consistent with the ability of FJG1 to couple denitrification with methane oxidation. Copyright © 2018 Orata et al.

July 7, 2019 |

Complete genome sequence of Sphingobium sp. strain YG1, a lignin model dimer-metabolizing bacterium isolated from sediment in Kagoshima Bay, Japan.

Sphingobium sp. strain YG1 is a lignin model dimer-metabolizing bacterium newly isolated from sediment in Kagoshima, Japan, at a depth of 102 m. Here, we report the complete genome nucleotide sequence of strain YG1. Copyright © 2018 Ohta et al.

July 7, 2019 |

Whole-genome sequence of Acetobacter orientalis strain FAN1, isolated from Caucasian yogurt.

In traditional Caucasian yogurt, Acetobacter orientalis bacteria play important roles in the fermentation of milk in concert with Lactococcus bacteria. In this study, an A. orientalis strain, FAN1, was newly isolated from commercially available Caucasian yogurt, and its whole-genome sequence was determined, identifying two circular DNAs. Copyright © 2018 Nakashima and Tamura.

July 7, 2019 |

Complete chromosome and plasmid sequences of two plant pathogens, Dickeya solani strains D s0432-1 and PPO 9019.

Dickeya solani species are emerging bacterial pathogens of Solanum tuberosum Here, we announce the complete genome sequences of two strains, Dickeya solani D s0432-1 and PPO 9019. Strain PPO 9019 represents the first described member of the genus Dickeya with an extrachromosomal genetic element. Copyright © 2018 Khayi et al.

July 7, 2019 |

Genomic sequence of Saccharomyces cerevisiae BAW-6, a yeast strain optimal for brewing barley shochu.

Here, we report the draft genome sequence of Saccharomyces cerevisiae strain BAW-6, which is used for the production of barley shochu, a traditional Japanese spirit. This genomic information can be used to elucidate the genetic basis underlying the high alcohol production capacity and citric acid tolerance of shochu yeast. Copyright © 2018 Kajiwara et al.

July 7, 2019 |

Complete genome sequence of Lactobacillus plantarum subsp. plantarum strain LB1-2, Iiolated from the hindgut of European honeybees, Apis mellifera L., from the Philippines.

Lactobacillus plantarum subsp. plantarum strain LB1-2, isolated from the hindgut of European honeybees in the Philippines, is active against Paenibacillus larvae and has broad activity against several Gram-positive and Gram-negative bacteria. The complete genome sequence reported herein contains gene clusters for multiple bacteriocins and extensive gene inventories for carbohydrate metabolism. Copyright © 2018 Ilagan-Cruzada et al.

July 7, 2019 |

Draft genome sequence of Paucibacter aquatile CR182T, a strain with antimicrobial activity isolated from freshwater of Nakdong River in South Korea.

This report details a draft genome sequence of Paucibacter aquatile CR182T, isolated from river water, which contains 5,523,543?bp, has a G+C content of 66.3%, and harbors 4,544 protein-coding genes in 4 contigs. These genome data provide insights into the genetic basis of this strain’s antibacterial activity and adaptive mechanisms. Copyright © 2018 Chung et al.

July 7, 2019 |

Complete genome sequence of Shewanella sp. WE21, a rare isolate with multiple novel large genomic islands.

We present here the whole-genome sequence of Shewanella sp. WE21, an unusual omega-3 fatty acid-producing bacterium isolated from the gastrointestinal tract of the freshwater fish Sander vitreus (walleye). This genome contains a number of unique, large genomic islands with genes not present in other Shewanella bacteria. Copyright © 2018 Castillo et al.

July 7, 2019 |

Complete genome sequence of a natural Escherichia coli O145:H11 isolate that belongs to phylogroup A.

Escherichia coli O145:H11 strain RM14721 was originally isolated from wildlife feces near a leafy greens-growing region in Yuma, AZ. This strain was initially positive for stx1; however, in subsequent cultures, stx1 was not detected by PCR. Here, we report the complete genome sequence and annotation of RM14721.

July 7, 2019 |

Complete genome sequence of a VIM-1- producing Salmonella enterica subsp. enterica serovar Infantis isolate derived from minced pork meat.

Carbapenems are considered last-resort antibiotics used to treat human infections caused by multidrug-resistant bacteria. In 2011, VIM-1 carbapenemase-producing Salmonella enterica subsp. enterica serovar Infantis strains were isolated from livestock for the first time in Germany. Here, we announce the complete genome sequence of the first German blaVIM-1-harboring Salmonella Infantis isolate (15-SA01028) originating from food. Copyright © 2018 Borowiak et al.

July 7, 2019 |

Genome sequences of five Mycobacterium bovis strains isolated from farmed animals and wildlife in Canada.

Mycobacterium bovis is the causative agent of bovine tuberculosis, an infectious disease that affects both animals and humans and thus presents a risk to public health and the livestock industry. Here, we report the genome sequences of five Mycobacterium bovis strains that represent major genotype clusters observed in farmed animals and wildlife in Canada.© Crown copyright 2018.

July 7, 2019 |

Complete genome sequence of Loktanella vestfoldensis strain SMR4r, a novel strain isolated from a culture of the chain-forming diatom Skeletonema marinoi.

We report here the genome sequence of Loktanella vestfoldensis strain SMR4r, isolated from the marine diatom Skeletonema marinoi strain RO5AC. Its 3,987,360-bp genome consists of a circular chromosome and two circular plasmids, one of which appears to be shared with an S. marinoi-associated Roseovarius species. Copyright © 2018 Töpel et al.

Asset Tag: PacBio Systems

Reevaluation of the complete genome sequence of Magnetospirillum gryphiswaldense MSR-1 with Single-Molecule Real-Time Sequencing data.

Draft genome sequence of a Shewanella halifaxensis strain isolated from the intestine of marine red seabream (Pagrus major), which includes an integrative conjugative element with macrolide resistance genes.

Complete genome sequence of the heavy-Metal-tolerant endophytic type strain of Salinicola tamaricis.

Complete genome sequence of Methylomonas denitrificans strain FJG1, an obligate aerobic methanotroph that can couple methane oxidation with denitrification.

Complete genome sequence of Sphingobium sp. strain YG1, a lignin model dimer-metabolizing bacterium isolated from sediment in Kagoshima Bay, Japan.

Whole-genome sequence of Acetobacter orientalis strain FAN1, isolated from Caucasian yogurt.

Complete chromosome and plasmid sequences of two plant pathogens, Dickeya solani strains D s0432-1 and PPO 9019.

Genomic sequence of Saccharomyces cerevisiae BAW-6, a yeast strain optimal for brewing barley shochu.

Complete genome sequence of Lactobacillus plantarum subsp. plantarum strain LB1-2, Iiolated from the hindgut of European honeybees, Apis mellifera L., from the Philippines.

Draft genome sequence of Paucibacter aquatile CR182T, a strain with antimicrobial activity isolated from freshwater of Nakdong River in South Korea.

Complete genome sequence of Shewanella sp. WE21, a rare isolate with multiple novel large genomic islands.

Complete genome sequence of a natural Escherichia coli O145:H11 isolate that belongs to phylogroup A.

Complete genome sequence of a VIM-1- producing Salmonella enterica subsp. enterica serovar Infantis isolate derived from minced pork meat.

Genome sequences of five Mycobacterium bovis strains isolated from farmed animals and wildlife in Canada.

Complete genome sequence of Loktanella vestfoldensis strain SMR4r, a novel strain isolated from a culture of the chain-forming diatom Skeletonema marinoi.

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