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Documentation

Welcome to the PacBio Documentation page. The table below allows you to search for and download the latest guides, protocols, product information, and more. For any questions about our documentation, please contact us.

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Asset Type
Workflow Step
Product Line

Analysis Procedure – Multiplexed Microbial Assembly with SMRT Link v8.0 and SMRTbell Express Template Prep Kit 2.0

Procedure & Checklist
Sequel II System, Sequel System
Analysis

Description +

This document describes analysis procedures using SMRT Link v8.0 for assemblying microbial genomes from multiplexed libraries created using the SMRTbell Express Template Prep Kit 2.0. Note: A revision to this protocol to support multiplexing of up to 48 genomes on the Sequel II System is expected by October, 2019. If interested in learning more, contact Technical Support.

SMRT Link User Guide (v8.0)

Guide & Overview
Sequel II System, Sequel System
Analysis

Description +

This document describes how to use Pacific Biosciences’ SMRT Link software (v8.0). SMRT Link is the web-based end-to-end workflow manager for Sequel Systems.

SMRT Link Software Installation (v8.0)

Guide & Overview
Sequel II System, Sequel System
Analysis

Description +

This document describes the procedure for installing SMRT Link v8.0 on a customer system. This document is for use by Customer IT.

Quick Reference Card – SMRT Link v8.0 Migration

Quick Reference Card
Sequel II System, Sequel System
Analysis

Description +

This document summarizes the changes in SMRT Link v8.0 in relation to prior SMRT Link versions and provides useful information for planning an upgrade to SMRT Link v8.0.

SMRT Tools Reference Guide (v8.0)

Guide & Overview
Sequel II System, Sequel System
Analysis

Description +

This document describes the command line tools included with SMRT Link v8.0. These tools are used by bioinformaticians working with secondary analysis results.

Sequel SMRT Link Web Services API Use Cases (v8.0)

Developer Documentation
Sequel II System, Sequel System
Analysis

Description +

This document describes common tasks performed using the SMRT Link (v8.0) Web Services API and provides "how to" recipes for accomplishing these tasks. To accomplish a task, you usually need to perform several API calls; the document describes the order of these calls.

Sequel II System Release Notes (v8.0)

Release Notes
Sequel II System
Sequencing

Description +

This document describes the command line tools included with SMRT Link v8.0.0. These tools are used by bioinformaticians working with secondary analysis results.