Featured Documentation

Overview – Nanobind HMW DNA extraction overview

Description

This overview provides links to all standard procedures for extracting HMW DNA by sample type and compatible Nanobind kit.

Procedure checklist preparing MAS-Seq libraries using MAS-Seq for 10x 3 concatenation kit

Description

This procedure describes the workflow for constructing single-cell MAS-Seq (Multiplexed Arrays Sequencing) libraries from 10x Chromium 3’ cDNA using the MAS-Seq for 10x Single Cell 3’ kit for library prep and sequencing on PacBio systems.

SMRT Link installation guide v11.1

Description

This document describes the procedure for installing SMRT Link v11.1 on a customer system. This document is for use by Customer IT.

SMRT Tools reference guide v11.1

Description

This document describes the command-line tools included with SMRT Link v11.1. These tools are used by bioinformaticians working with secondary analysis results.

SMRT Link user guide v11.1

Description

This document describes how to use PacBio's SMRT Link software (v11.1). SMRT Link is the web-based end-to-end workflow manager for Sequel II/IIe systems.

SMRT Link release notes v11.1

Description

Release notes for SMRT Link v11.1.

Guide & overview – Nanobind plant nuclei kit

Description

This document describes procedures on how to use the Nanobind Plant Nuclei Big DNA Kit for extraction of HMW (50 kb – 300+ kb) DNA from plant nuclei.

Guide & overview – Nanobind CBB kit

Description

This document describes procedures on how to use the Nanobind CBB Kit for extraction of HMW (50 kb – 300+ kb) DNA from cultured cells, cultured bacteria, and blood.

Guide & overview – Nanobind tissue kit

Description

This document describes procedures on how to use the Nanobind tissue kit for extraction of HMW (50 kb – 300+ kb) and UHMW (50 kb – 1+ Mb) DNA from animal tissue samples.

Procedure & checklist – Preparing whole genome and metagenome sequencing libraries using SMRTbell prep kit 3.0

Description

This procedure can be used to construct whole-genome sequencing (WGS) libraries from genomic and metagenomic DNA using the SMRTbell prep kit 3.0 for sequencing on PacBio systems.

Procedure & checklist – PacBio HiFiViral high-throughput multiplexing for full-viral genome sequencing of SARS-CoV-2 using SMRTbell prep kit 3.0

Description

This procedure can be used to capture the SARS-CoV-2 genome with tiled molecular inversion probes that create highly redundant overlapping amplicons resulting in comprehensive sequence coverage on the Sequel II and Sequel IIe Systems

Procedure & checklist – Preparing Iso-Seq libraries using SMRTbell prep kit 3.0

Description

This procedure can be used to construct Iso-Seq libraries from RNA for sequencing on PacBio Sequel II and IIe systems.

Procedure & checklist – Preparing multiplexed amplicon libraries using SMRTbell prep kit 3.0

Description

This procedure can be used to construct amplicon libraries using the SMRTbell prep kit 3.0 for sequencing on PacBio Sequel II and IIe systems. Amplicons may be barcoded during PCR, during library prep with SMRTbell barcoded adapters, or by both methods to create nested barcode combinations.

Procedure & checklist – Preparing multiplexed AAV SMRTbell libraries using SMRTbell prep kit 3.0

Description

This procedure can be used to prepare multiplexed AAV libraries for sequencing on the Sequel II and Sequel IIe systems. Multiplexing is achieved using SMRTbell barcoded adapters.

Procedure & Checklist – Preparing SMRTbell Libraries using PacBio Barcoded M13 Primers for Multiplex SMRT Sequencing

Description

This procedure can be used to generate asymmetrically barcoded PCR products for library construction and SMRT sequencing by amplifying the region of interest using target-specific PCR primers tailed with M13 forward and reverse primers.