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July 7, 2019

Synthetic biology, genome mining, and combinatorial biosynthesis of NRPS-derived antibiotics: a perspective.

Combinatorial biosynthesis of novel secondary metabolites derived from nonribosomal peptide synthetases (NRPSs) has been in slow development for about a quarter of a century. Progress has been hampered by the complexity of the giant multimodular multienzymes. More recently, advances have been made on understanding the chemical and structural biology of these complex megaenzymes, and on learning the design rules for engineering functional hybrid enzymes. In this perspective, I address what has been learned about successful engineering of complex lipopeptides related to daptomycin, and discuss how synthetic biology and microbial genome mining can converge to broaden the scope and enhance the speed and robustness of combinatorial biosynthesis of NRPS-derived natural products for drug discovery.


July 7, 2019

Complete genome sequence of the poly-?-glutamate-synthesizing Bacterium Bacillus subtilis Bs-115.

Bacillus subtilis Bs-115 was isolated from the soil of a corn field in Yutai County, Jinan City, Shandong Province, People’s Republic of China, and is characterized by the efficient synthesis of poly-?-glutamate (?-PGA), with corn saccharification liquid as the sole energy and carbon source during the process of ?-PGA formation. Here, we report the complete genome sequence of Bacillus subtilis Bs-115 and the genes associated with poly-?-glutamate synthesis. Copyright © 2018 Wang et al.


July 7, 2019

Complete genome sequence of Methylomonas denitrificans strain FJG1, an obligate aerobic methanotroph that can couple methane oxidation with denitrification.

Methylomonas denitrificans strain FJG1 is a member of the gammaproteobacterial methanotrophs. The sequenced genome of FJG1 reveals the presence of genes that encode methane, methanol, formaldehyde, and formate oxidation. It also contains genes that encode enzymes for nitrate reduction to nitrous oxide, consistent with the ability of FJG1 to couple denitrification with methane oxidation. Copyright © 2018 Orata et al.


July 7, 2019

Complete genome sequence of Lactobacillus plantarum subsp. plantarum strain LB1-2, Iiolated from the hindgut of European honeybees, Apis mellifera L., from the Philippines.

Lactobacillus plantarum subsp. plantarum strain LB1-2, isolated from the hindgut of European honeybees in the Philippines, is active against Paenibacillus larvae and has broad activity against several Gram-positive and Gram-negative bacteria. The complete genome sequence reported herein contains gene clusters for multiple bacteriocins and extensive gene inventories for carbohydrate metabolism. Copyright © 2018 Ilagan-Cruzada et al.


July 7, 2019

Draft genome sequence of Paucibacter aquatile CR182T, a strain with antimicrobial activity isolated from freshwater of Nakdong River in South Korea.

This report details a draft genome sequence of Paucibacter aquatile CR182T, isolated from river water, which contains 5,523,543?bp, has a G+C content of 66.3%, and harbors 4,544 protein-coding genes in 4 contigs. These genome data provide insights into the genetic basis of this strain’s antibacterial activity and adaptive mechanisms. Copyright © 2018 Chung et al.


July 7, 2019

Draft whole-genome sequence of the fluorene-degrading Sphingobium sp. strain LB126, isolated from polycyclic aromatic hydrocarbon-contaminated soil.

We report here the draft whole-genome sequence of a fluorene-degrading bacterium, Sphingobium sp. strain LB126. The genes involved in the upper biodegradation pathway of fluorene are located on a plasmid, and the lower pathway that generates tricarboxylic acid cycle intermediates is initiated by the meta-cleavage of protocatechuic acid that is chromosomally encoded. Copyright © 2018 Augelletti et al.


July 7, 2019

Next-generation sequencing of Haematococcus lacustris reveals an extremely large 1.35-megabase chloroplast genome.

Haematococcus lacustris is an industrially relevant microalga that is used for the production of the carotenoid astaxanthin. Here, we report the use of PacBio long-read sequencing to assemble the chloroplast genome of H. lacustris strain UTEX:2505. At 1.35?Mb, this is the largest assembled chloroplast of any plant or alga known to date. Copyright © 2018 Bauman et al.


July 7, 2019

Draft genome sequence and annotation of the phytopathogenic Ralstonia pickettii (previously Burkholderia glumae) strain ICMP-8657.

Strain ICMP-8657 was formerly taxonomically classified as Burkholderia glumae and reported to be the producer of an antibacterial pyrazole derivative. Here, we report the draft genome sequence of ICMP-8657, which failed to demonstrate the biosynthetic capacity to produce the stated antibacterial compound, leading to its taxonomic reclassification as Ralstonia pickettii ICMP-8657. Copyright © 2018 Paterson and Gross.


July 7, 2019

Draft genome sequence of Streptomyces sp. strain DH-12, a soilborneisolate from the Thar Desert with broad-spectrum antibacterial activity.

Strain DH-12 exhibits broad-spectrum antibacterial activity toward Gram-positive and Gram-negative pathogens. The 7.6-Mb draft genome sequence gives insight into the complete secondary metabolite production capacity and reveals genes putatively responsible for its antibacterial activity, as well as genes which enable the survival of the organism in an extreme arid environment. Copyright © 2018 Jiao et al.


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