Draft genome Archives - Page 20 of 20

July 7, 2019

Draft genome sequence of Bacillus velezensis Lzh-a42, a plant growth- promoting rhizobacterium isolated from tomato rhizosphere.

The plant growth-promoting rhizobacterium Bacillus velezensis strain Lzh-a42, which has antimicrobial activity, was isolated from tomato rhizosphere. Here, we report its genome sequence, which includes several predicted functional genes related to secondary metabolite biosynthesis, antimicrobial activity, and biofilm synthesis. Copyright © 2018 Li et al.

July 7, 2019

Draft genome sequence and annotation of the phytopathogenic Ralstonia pickettii (previously Burkholderia glumae) strain ICMP-8657.

Strain ICMP-8657 was formerly taxonomically classified as Burkholderia glumae and reported to be the producer of an antibacterial pyrazole derivative. Here, we report the draft genome sequence of ICMP-8657, which failed to demonstrate the biosynthetic capacity to produce the stated antibacterial compound, leading to its taxonomic reclassification as Ralstonia pickettii ICMP-8657. Copyright © 2018 Paterson and Gross.

July 7, 2019

Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blight

Erwinia pyrifoliae is a Gram-negative bacterium causing black shoot blight in apple and Asian pear trees. E. pyrifoliae strain EpK1/15 was isolated in 2014 from an apple twig from the Pocheon, Gyeonggi-do, South Korea. In this study, we report the draft genome sequence of E. pyrifoliae EpK1/15 using PacBio RS II platform. The draft genome is comprised of a circular chromosome with 4,027,225 bp and 53.4% G + C content and a plasmid with 48,456 bp and 50.3% G + C content. The draft genome includes 3,798 protein-coding genes, 22 rRNA genes, 77 tRNA genes, 13 non-coding RNA genes, and 231 pseudo genes.

July 7, 2019

Draft genome sequence of Lawsonibacter asaccharolyticus JCM 32166T, a butyrate-producing bacterium, isolated from human feces.

Here, we report the draft genome sequence of Lawsonibacter asaccharolyticus JCM 32166T, a butyrate-producing bacterium, isolated from human feces. The genomic analysis reveals genes for butyrate synthesis and will facilitate the study on the role of this strain in the human gut. Copyright © 2018 Sakamoto et al.

July 7, 2019

Draft genome sequence of a “Candidatus Liberibacter europaeus” strain assembled from Broom Psyllids (Arytainilla spartiophila) from New Zealand.

Here, we report the draft genome sequence of “Candidatus Liberibacter europaeus” ASNZ1, assembled from broom psyllids (Arytainilla spartiophila) from New Zealand. The assembly comprises 15 contigs, with a total length of 1.33?Mb and a G+C content of 33.5%. Copyright © 2018 Frampton et al.

July 7, 2019

Draft genome sequence of the fish pathogen Flavobacterium columnare strain MS-FC-4.

Flavobacterium columnare MS-FC-4 is a highly virulent genetic group 1 (formerly genomovar I) strain isolated from rainbow trout (Oncorhynchus mykiss). The draft genome consists of three contigs totaling 3,449,277 bp with 2,811 predicted open reading frames. F. columnare MS-FC-4 is a model strain for functional genomic analyses.

July 7, 2019

Improved draft genome sequence of a monoteliosporic culture of the karnal bunt (Tilletia indica) pathogen of wheat.

Karnal bunt of wheat is an internationally quarantined fungal pathogen disease caused by Tilletia indica and affects the international commercial seed trade of wheat. We announce here the first improved draft genome assembly of a monoteliosporic culture of the Tilletia indica fungus, consisting of 787 scaffolds with an approximate total genome size of 31.83 Mbp, which is more accurate and near to complete than the previous version. Copyright © 2018 Kumar et al.

July 7, 2019

Draft genome sequence of Tuber borchii Vittad., a whitish edible truffle.

The ascomycete Tuber borchii (Pezizomycetes) is a whitish edible truffle that establishes ectomycorrhizal symbiosis with trees and shrubs. This fungus is ubiquitous in Europe and is also cultivated outside Europe. Here, we present the draft genome sequence of T. borchii strain Tbo3840 (97.18 Mb in 969 scaffolds, with 12,346 predicted protein-coding genes).

July 7, 2019

Draft genome sequence of Deinococcus koreensis SJW1-2T, a gamma radiation-resistant bacterium isolated from river water.

Deinococcus koreensis SJW1-2Twas isolated from river water and was observed to be highly resistant to gamma radiation. In this study, we report a draft genome sequence which revealed that SJW1-2Tpossesses genes involved in nucleo- tide excision repair. The primary genomic information will aid in elucidating the DNA repair mechanism during ionizing radiation.

July 7, 2019

Draft genome sequence of the pristinamycin-producing strain Streptomyces sp. SW4, isolated from soil in Nusa Kambangan, Indonesia.

Streptomyces sp. strain SW4 exhibited broad-spectrum antibacterial activity toward Gram-positive and Gram-negative pathogens. The 7.5-Mb draft genome se- quence gives insight into the complete secondary metabolite production capacity and reveals genes putatively responsible for its antibacterial activity.

July 7, 2019

Annotated draft genome sequence of the apple scab pathogen Venturia inaequalis

Apple scab is one of the most economically important diseases of apples worldwide. The disease is caused by the haploid ascomycete Venturia inaequalis. We present here an annotated V. inaequalis whole-genome sequence of 72?Mb, assembled into 238 contigs, with 13,761 predicted genes.

July 7, 2019

Draft genome sequence of an Erwinia tracheiphila isolate from an infected muskmelon (Cucumis melo).

Erwinia tracheiphila is a bacterial plant pathogen emerging in eastern North America. To aid in understanding genetic variation within E. tracheiphila, here we sequence the first reference genome of an infected muskmelon (Cucumis melo). The genome assembles into a single chromosomal contig, three plasmid contigs, and one bacteriophage contig.

July 7, 2019

The Draft Genome of the MD-2 Pineapple

The main challenge in assembling plant genome is its ploidy level, repeats content, and polymorphism. The second-generation sequencing delivered the throughput and the accuracy that is crucial to whole-genome sequencing but insufficient and remained challenging for some plant species. It is known that genomes produced by next-gen- eration sequencing produced small contigs that would inflate the number of annotated genes (Varshney et al. 2011) and missed on the transposable elements that are abun- dant in plant genome due to their repetitive nature (Michael and Jackson 2013).

Asset Tag: Draft genome

Draft genome sequence of Bacillus velezensis Lzh-a42, a plant growth- promoting rhizobacterium isolated from tomato rhizosphere.

Draft genome sequence and annotation of the phytopathogenic Ralstonia pickettii (previously Burkholderia glumae) strain ICMP-8657.

Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blight

Draft genome sequence of Lawsonibacter asaccharolyticus JCM 32166T, a butyrate-producing bacterium, isolated from human feces.

Draft genome sequence of a “Candidatus Liberibacter europaeus” strain assembled from Broom Psyllids (Arytainilla spartiophila) from New Zealand.

Draft genome sequence of the fish pathogen Flavobacterium columnare strain MS-FC-4.

Improved draft genome sequence of a monoteliosporic culture of the karnal bunt (Tilletia indica) pathogen of wheat.

Draft genome sequence of Tuber borchii Vittad., a whitish edible truffle.

Draft genome sequence of Deinococcus koreensis SJW1-2T, a gamma radiation-resistant bacterium isolated from river water.

Draft genome sequence of the pristinamycin-producing strain Streptomyces sp. SW4, isolated from soil in Nusa Kambangan, Indonesia.

Annotated draft genome sequence of the apple scab pathogen Venturia inaequalis

Draft genome sequence of an Erwinia tracheiphila isolate from an infected muskmelon (Cucumis melo).

The Draft Genome of the MD-2 Pineapple

Subscribe for blog updates:

Filter by topic

Talk with an expert

Antimicrobial resistance research

Subscribe for blog updates:

Filter by topic

Talk with an expert