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SMRT Science

Datasets

SMRT Sequencing Datasets

Explore these publicly available datasets generated with Single Molecule, Real-Time (SMRT) Sequencing.

Additional information about each dataset can be found by clicking the dataset link. All datasets listed on this page are available for use without need for further permission.

 

Whole Genome Sequencing

 

Application Dataset Data Type PacBio System
Variant detection, Assembly Homo sapiens – GIAB sample HG002 HiFi Reads Sequel II System
Assembly Oryza sativa – MH63 HiFi Reads Sequel IIe System
Assembly (Low DNA input) Anopheles gambiae – 2 plex HiFi Reads Sequel II System
Assembly (Ultra-Low DNA input) Phlebotomus papatasi, Homo sapiens, Drosophila melanogaster HiFi Reads Sequel II System
Assembly Microbial Multiplexing Data Set – 48 plex Long reads Sequel II System

 

Learn more about whole genome sequencing applications

 

RNA Sequencing

 

Application Dataset Data Type PacBio System
Whole transcriptome Homo sapiens – Brain with Alzheimer’s Disease HiFi reads Sequel II System
Whole transcriptome Homo sapiens – Universal Human Reference RNA (UHRR) HiFi reads Sequel II System

 

Learn more about RNA sequencing applications

 

Targeted Sequencing

 

Application Dataset Data Type PacBio System
No-Amp Targeted Sequencing Homo sapiens – Repeat expansions in HTT and FMR1 genes HiFi reads Sequel II System

 

Learn more about targeted sequencing applications

 

Complex Populations

Application Dataset Data Type PacBio System
Viral sequencing SARS-CoV-2  – ATCC Control with Eden Primers HiFi reads Sequel II System
Metagenomic profiling and assembly 20 Strain Mock Microbial Community  – ATCC MSA-1003 – Shotgun HiFi reads Sequel II System
Metagenomic profiling and assembly Human Gut Microbiome Pooled Standards HiFi reads Sequel IIe System
Full-length 16S sequencing 20 Strain Mock Microbial Community –  ATCC MSA-1003 – 16S HiFi reads Sequel II System

 

Learn more about complex populations applications

 

File Formats

Dataset Data Type PacBio System
reads.bam and hifi_reads.bam HiFi reads Sequel IIe System
reads.bam and hifi_reads.bam with kinetic information HiFi reads Sequel IIe System

 

 

Get Started with SMRT Sequencing

 

Have questions about these datasets or would you like a free project consultation? Connect with a PacBio scientist. Or find a PacBio Certified Service Provider to get started with your next project.

 

 

 

Webinar

Bioinformatics Workflows for Amplicon Sequencing: from HiFi Data to Results

 June 22, 2021

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