September 22, 2019  |  

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants.

Authors: Brown, John W S and Calixto, Cristiane P G and Zhang, Runxuan

Re-programming of the transcriptome involves both transcription and alternative splicing (AS). Some genes are regulated only at the AS level with no change in expression at the gene level. AS data must be incorporated as an essential aspect of the regulation of gene expression. RNA-sequencing (RNA-seq) can deliver both transcriptional and AS information, but accurate methods to analyse the added complexity in RNA-seq data are needed. The construction of a comprehensive reference transcript dataset (RTD) for a specific plant species, variety or accession, from all available sequence data, will immediately allow more robust analysis of RNA-seq data. RTDs will continually evolve and improve, a process that will be more efficient if resources across a community are shared and pooled.© 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Journal: The New phytologist
DOI: 10.1111/nph.14208
Year: 2017

Read publication

Talk with an expert

If you have a question, need to check the status of an order, or are interested in purchasing an instrument, we're here to help.