April 21, 2020  |  

Complete genome sequence of novel Sulfitobacter pseudonitzschiae strain SMR1, isolated from a culture of the marine diatom Skeletonema marinoi.

Authors: Töpel, Mats and Pinder, Matthew I M and Johansson, Oskar N and Kourtchenko, Olga and Clarke, Adrian K and Godhe, Anna

When studying diatoms, an important consideration is the role of associated bacteria in the diatom-microbiome holobiont. To that end, bacteria isolated from a culture of Skeletonema marinoi strain R05AC were sequenced, one of which being bacterial strain SMR1, presented here. The genome consists of a circular chromosome and seven circular plasmids, totalling 5,121,602 bp. After phylotaxonomic analysis and 16S rRNA sequence comparison, we place this strain in the taxon Sulfitobacter pseudonitzschiae on account of similarity to the type strain. The annotated genome suggests similar interactions between strain SMR1 and its host diatom as have been shown previously in diatom-associated Sulfitobacter, for example bacterial production of growth hormone for its host, and breakdown of diatom-derived DMSP by Sulfitobacter for use as a sulfur source.

Journal: Journal of genomics
DOI: 10.7150/jgen.30559
Year: 2019

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