September 22, 2019  |  

Genome of Tenualosa ilisha from the river Padma, Bangladesh.

Authors: Das, Avizit and Ianakiev, Peter and Baten, Abdul and Nehleen, Rifath and Ehsan, Tasneem and Ahmed, Oly and Islam, Mohammad Riazul and Naser, M Niamul and Marma, Mong Sano and Khan, Haseena

Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa.The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome.

Journal: BMC research notes
DOI: 10.1186/s13104-018-4028-8
Year: 2018

Read publication

Talk with an expert

If you have a question, need to check the status of an order, or are interested in purchasing an instrument, we're here to help.